Peaks2D.h

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#ifndef __KOME_OBJECTS_PEAKS_2D_H__
#define __KOME_OBJECTS_PEAKS_2D_H__


#include "Peaks2DArray.h"

#include <vector>


namespace kome {
    namespace objects {

        class PeaksCluster2D;

        class DATA_OBJECTS_CLASS Peaks2D : public Peaks2DArray {
        public:
            Peaks2D();

            Peaks2D( const Peaks2D& peaks );

            virtual ~Peaks2D();

        public:
            Peaks2D& operator=( const Peaks2D& other );

        protected:
            std::vector< PeaksCluster2D* > m_clusters;

        protected:
            int m_dataId;

        public:
            Peak2DElement* createPeak(
                const double rt,
                const double startRt,
                const double endRt,
                const double mz,
                const double startMz,
                const double endMz,
                const double intensity
            );

// @date 2011.03.04 <Add> M.Aihara ->
// add createPeak TBB parallel code
#ifdef  ENABLE_MASSPP_PARALLEL_TBB_MODE

            Peak2DElement* createPeak_TBB(
                const double rt,
                const double startRt,
                const double endRt,
                const double mz,
                const double startMz,
                const double endMz,
                const double intensity
            );
            void push_back_TBB(
                std::vector<kome::objects::Peak2DElement*>& peak
            );
#endif //  ENABLE_MASSPP_PARALLEL_TBB_MODE
// <Add> M.Aihara <-

            Peak2DElement* createPeak(
                const double rt,
                const double mz,
                const double intensity
            );

            void clearPeaks();

            void removePeak( Peak2DElement* peak );

            void removePeak( const unsigned int idx );

        public:
            PeaksCluster2D* createCluster();

            unsigned int getNumberOfClusters();

            PeaksCluster2D* getCluster( const unsigned int idx );

            void clearClusters();

            void removeCluster( PeaksCluster2D* cluster );

            void removeCluster( const unsigned int idx );

        public:
            void setDataId( const int id );

            int getDataId();

        };
    }
}

#endif      // __KOME_OBJECTS_PEAKS_2D_H__