SpectraChromatogram.h

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#ifndef __KOME_OBJECTS_GROUP_CHROMAOTGRAM_H__
#define __KOME_OBJECTS_GROUP_CHROMAOTGRAM_H__


#include "DataObjectsCommon.h"
#include "Chromatogram.h"

#include <vector>


namespace kome {
    namespace objects {

        class DATA_OBJECTS_CLASS SpectraChromatogram : public Chromatogram {
        public:
            SpectraChromatogram( DataSet& dataSet, bool bProces=false );

            virtual ~SpectraChromatogram();

        protected:
            DataSet* m_spectra;

            double m_minMz;

            double m_maxMz;

            double m_minRt;

            double m_maxRt;

            unsigned char m_filter;

            bool m_tic;
            
            bool m_proc;
        protected:
            static const unsigned char m_msFilters[];

        public:
            DataSet& getMemberSpectra();

            void setMzRange( const double minMz, const double maxMz );

            void setMinMz( const double mz );

            void setMaxMz( const double mz );

            double getMinMz();

            double getMaxMz();

            void setRtRange( const double minRt, const double maxRt );

            void setMinRt( const double rt );

            void setMaxRt( const double rt );

            double getMinRt();

            double getMaxRt();

            void setFilter( const unsigned char filter );

            unsigned char getFilter();

            void setTIC();

            void setBPC();

            bool isTIC();

            bool isBPC();

        protected:
            void setTitle();

            void getIntensities();

            void getMemberSpectra( std::vector< Spectrum* >& spectra );

            int searchSpectrumIndex(
                std::vector< Spectrum* >& spectra,
                const double rt,
                SearchType search
            );

        protected:
            virtual void onGetXYData( kome::core::XYData* const xyData );

            virtual void onGetSpectra(
                DataSet& spectra,
                const double startRt,
                const double endRt,
                const SearchType startSearch,
                const SearchType endSearch
            );

            virtual double onGetMass( const unsigned int index );

            virtual int onGetMsStage( const unsigned int index );

            virtual double onGetPrecursor( const unsigned int index );
        };
    }
}

#endif  // __KOME_OBJECTS_GROUP_CHROMAOTGRAM_H__