MzmlChromatogram.h

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#ifndef __KOME_IO_MZML_CHROMATOGRAM_H__
#define __KOME_IO_MZML_CHROMATOGRAM_H__


#include <vector>


namespace kome {
    namespace io {
        namespace mzml {

            class MzmlSample;

            class MzmlChromatogram : public kome::objects::Chromatogram {
            public:
                MzmlChromatogram( MzmlSample* file );

                virtual ~MzmlChromatogram();

            protected:
                MzmlSample* m_mzmlSample;

            protected:
                long long m_offset;

            public:
                void setOffset( const long long offset );

                long long getOffset();

            protected:
                void parse( xercesc::SAX2XMLReader* parser );

            protected:
                virtual void onGetXYData( kome::core::XYData* const xyData );

                virtual void onGetSpectra(
                    kome::objects::DataSet& dataSet,
                    const double startRt,
                    const double endRt,
                    const kome::objects::SearchType startSearch,
                    const kome::objects::SearchType endSearch
                );

                virtual double onGetMass( const unsigned int index );

                virtual int onGetMsStage( const unsigned int index );

                virtual double onGetPrecursor( const unsigned int index );
            };
        }
    }
}


#endif      // __KOME_IO_MZML_CHROMATOGRAM_H__