MzmlIOPluginFunctions.cpp

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#include "stdafx.h"
#include "MzmlIOPluginFunctions.h"
#include "MzmlSample.h"
#include "MzmlManager.h"
#include "MzmlSampleSet.h"

#define DATA_STATUS      "data_status"


using namespace kome::io::mzml;


#include <crtdbg.h>
#ifdef _DEBUG
    #define new new( _NORMAL_BLOCK, __FILE__, __LINE__ )
    #define malloc( s ) _malloc_dbg( s, _NORMAL_BLOCK, __FILE__, __LINE__ )
#endif    // _DEBUG



// open file
kome::objects::Variant openMzml( kome::objects::Parameters* params ) {
    // return value
    kome::objects::Variant ret;
    ret.type = kome::objects::Variant::SAMPLE_SET;
    ret.prim.pt = NULL;

    // get path
    const char* path = kome::plugin::PluginCallTool::getPath( params );
    if( path == NULL ) {
        return ret;
    }

    // open
    MzmlSampleSet* sampleSet = new MzmlSampleSet();

    // set file
    ret.prim.pt = sampleSet;

    return ret;
}
                         
// save file
kome::objects::Variant saveMzml( kome::objects::Parameters* params ) {
    // return value
    kome::objects::Variant ret;
    ret.type = kome::objects::Variant::BOOL;
    ret.prim.boolVal = false;

    // gets parameters
    kome::objects::DataSet* dataSet = kome::plugin::PluginCallTool::getDataSet( params );
    if( dataSet == NULL ) {
        return ret;
    }

    char* path = kome::plugin::PluginCallTool::getPath( params );
    if( path == NULL ) {
        return ret;
    }

    kome::core::Progress* progress = kome::plugin::PluginCallTool::getProgress( params );
    if( progress == NULL ) {
        progress = &kome::core::Progress::getIgnoringProgress();
    }

    kome::objects::SettingParameterValues* saveSettings = kome::plugin::PluginCallTool::getSettingValues( params );  // @date 2012/08/21 <Add> FUJITA
       
    // write
    MzmlManager& mgr = MzmlManager::getInstance();
    ret.prim.boolVal = mgr.exportDataSet( path, *dataSet, *progress, saveSettings );
    return ret;
}