AlignedChromatogram.h

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#ifndef __KOME_OPERATION_ALIGNED_CHROMATOGRAM_H__
#define __KOME_OPERATION_ALIGNED_CHROMATOGRAM_H__


#include "Alignment.h"


namespace kome {
    namespace operation {

        class DATA_OPERATION_CLASS AlignedChromatogram : public kome::objects::Chromatogram {
        public:
            AlignedChromatogram( kome::objects::Chromatogram& org, Alignment* align );

            virtual ~AlignedChromatogram();

        protected:
            kome::objects::Chromatogram& m_org;

            Alignment* m_align;

        protected:
            virtual void onGetXYData( kome::core::XYData* const xyData );

            virtual void onGetSpectra(
                kome::objects::DataSet& spectra,
                const double startRt,
                const double endRt,
                const kome::objects::SearchType startSearch,
                const kome::objects::SearchType endSearch
            );

            virtual double onGetMass( const unsigned int index );

            virtual int onGetMsStage( const unsigned int index );

            virtual double onGetPrecursor( const unsigned int index );
        };
    }
}


#endif  // __KOME_OPERATION_ALIGNED_CHROMATOGRAM_H__