Accession.cpp

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#include "stdafx.h"
#include "Accession.h"


using namespace kome::io::mzml;


#include <crtdbg.h>
#ifdef _DEBUG
    #define new new( _NORMAL_BLOCK, __FILE__, __LINE__ )
    #define malloc( s ) _malloc_dbg( s, _NORMAL_BLOCK, __FILE__, __LINE__ )
#endif    // _DEBUG



// constructor
Accession::Accession( const char* id, const char* name ) {
    m_id = NVL( id, "" );
    m_name = NVL( name, "" );
    m_parent = NULL;
    m_origin = NULL;
}

// constructor
Accession::Accession( const char* id ) {
    m_id = NVL( id, "" );
    m_parent = NULL;
    m_origin = NULL;
}

// destructor
Accession::~Accession() {
}

// get ID
const char* Accession::getId() {
    return m_id.c_str();
}

// set name
void Accession::setName( const char* name ) {
    m_name = NVL( name, "" );
}

// get name
const char* Accession::getName() {
    return m_name.c_str();
}

// set parent accession
void Accession::setParent( Accession* parent ) {
    m_parent = parent;
}

// get parent accession
Accession* Accession::getParent() {
    return m_parent;
}

// get origin
Accession* Accession::getOrigin() {
    // check members
    if( m_parent == NULL ) {
        return this;
    }

    if( m_origin != NULL ) {
        return m_origin;
    }

    // search origin
    Accession* origin = this;

    std::set< Accession* > accSet;

    do {
        accSet.insert( origin );
        origin = origin->getParent();
    } while( origin != NULL && origin->getParent() != NULL
            && accSet.find( origin->getParent() ) == accSet.end() );

    m_origin = NVL( origin, this );

    return m_origin;
}