kome::io::mzml::Accession Class Reference

accession information class More...

#include <Accession.h>

Collaboration diagram for kome::io::mzml::Accession:

Public Member Functions
	Accession (const char *id, const char *name)
	constructor More...
	Accession (const char *id)
	constructor More...
virtual	~Accession ()
	destructor
const char *	getId ()
	gets accession ID More...
void	setName (const char *name)
const char *	getName ()
	gets accession name More...
void	setParent (Accession *parent)
	sets parent accession More...
Accession *	getParent ()
	gets parent accession More...
Accession *	getOrigin ()
	gets origin accesion More...

Protected Attributes
std::string	m_id
std::string	m_name
Accession *	m_parent
Accession *	m_origin

Detailed Description

accession information class

Definition at line 24 of file Accession.h.

Constructor & Destructor Documentation

kome::io::mzml::Accession::Accession	(	const char *	id,
		const char *	name
	)

constructor

Parameters

id	accession ID
name	accession name

Definition at line 28 of file Accession.cpp.

                                                       {
    m_id = NVL( id, "" );
    m_name = NVL( name, "" );
    m_parent = NULL;
    m_origin = NULL;
}

kome::io::mzml::Accession::Accession

(

const char *

id

)

constructor

Parameters

id	accession ID

Definition at line 36 of file Accession.cpp.

                                     {
    m_id = NVL( id, "" );
    m_parent = NULL;
    m_origin = NULL;
}

Member Function Documentation

const char * kome::io::mzml::Accession::getId

(

)

gets accession ID

Returns

accession ID

Definition at line 47 of file Accession.cpp.

                             {
    return m_id.c_str();
}

const char * kome::io::mzml::Accession::getName

(

)

gets accession name

Returns

accession name

Definition at line 57 of file Accession.cpp.

                               {
    return m_name.c_str();
}

Accession * kome::io::mzml::Accession::getOrigin

(

)

gets origin accesion

Returns

origin accession

Definition at line 72 of file Accession.cpp.

                                {
    // check members
    if( m_parent == NULL ) {
        return this;
    }

    if( m_origin != NULL ) {
        return m_origin;
    }

    // search origin
    Accession* origin = this;

    std::set< Accession* > accSet;

    do {
        accSet.insert( origin );
        origin = origin->getParent();
    } while( origin != NULL && origin->getParent() != NULL
            && accSet.find( origin->getParent() ) == accSet.end() );

    m_origin = NVL( origin, this );

    return m_origin;
}

Here is the call graph for this function:

Accession * kome::io::mzml::Accession::getParent

(

)

gets parent accession

Returns

parent accession

Definition at line 67 of file Accession.cpp.

                                {
    return m_parent;
}

void kome::io::mzml::Accession::setName

(

const char *

name

)

sets accession name

Parameters

name	accession name

Definition at line 52 of file Accession.cpp.

                                          {
    m_name = NVL( name, "" );
}

void kome::io::mzml::Accession::setParent

(

Accession *

parent

)

sets parent accession

Parameters

parent

parent accession

Definition at line 62 of file Accession.cpp.

                                             {
    m_parent = parent;
}

Member Data Documentation

std::string kome::io::mzml::Accession::m_id

protected

ID

Definition at line 49 of file Accession.h.

std::string kome::io::mzml::Accession::m_name

protected

name

Definition at line 52 of file Accession.h.

Accession* kome::io::mzml::Accession::m_origin

protected

origin

Definition at line 58 of file Accession.h.

Accession* kome::io::mzml::Accession::m_parent

protected

parent

Definition at line 55 of file Accession.h.

---

The documentation for this class was generated from the following files:

• MzmlIOPlugin/Accession.h
• MzmlIOPlugin/Accession.cpp