Normalization.cpp

Go to the documentation of this file.

#include "stdafx.h"
#include "Normalization.h"

using namespace kome::operation;


#include <crtdbg.h>
#ifdef _DEBUG
    #define new new( _NORMAL_BLOCK, __FILE__, __LINE__ )
    #define malloc( s ) _malloc_dbg( s, _NORMAL_BLOCK, __FILE__, __LINE__ )
#endif    // _DEBUG


// constructor
Normalization::Normalization(){
    m_fun = NULL;
    m_settings.clear();

    m_stdGroup = NULL;
    m_trmtGroup = NULL;

    setName( "" );
}

// destructor
Normalization::~Normalization(){
    init();
}

// initialze
void Normalization::init(){
    m_fun = NULL;
    m_settings.clear();

    setName( "" );
}

// set normalization function
void Normalization::setNormalizInfo( 
    kome::plugin::PluginCall* func,
    kome::objects::SettingParameterValues* settings,
    kome::objects::DataGroupNode* stdGroup 
){
    // initialize
    init();
    if( func == NULL ){
        return;
    }
    
    if( stdGroup != NULL ){
        m_stdGroup = stdGroup;
    }

    // set information
    m_fun = func;
    if( settings != NULL ){
        m_settings = *settings;
    }

    // item
    kome::plugin::PluginFunctionItem item;
    item.setInfo( func );

    // set name
    std::string name = FMT( "Normalization [%s", item.getLongName() );
    std::string paramStr;
    for( unsigned int i=0; i < m_settings.getNumberOfParameters(); i++ ){
        // add parameter name
        if( !paramStr.empty() ){
            paramStr.append( ", " );
        }

        std::string name = m_settings.getParameterName( i );
        std::string value = m_settings.getParameterValue( i );

        paramStr.append( FMT( "%s=%s", name.c_str(), value.c_str() ) );
    }

    if( paramStr.empty() ){
        name.append( "]" );
    }else{
        name.append( FMT( "(%s)]", paramStr.c_str() ) );
    }

    setName( name.c_str() );
}

// update data point
void Normalization::getUpdatedData(
    kome::core::XYData& src,
    kome::core::XYData& dst,
    kome::objects::Spectrum* spec
){
    // check the member
    if( m_fun == NULL ){
        LOG_WARN_CODE( FMT( "The filter function is not assigned." ), ERR_NULL_POINTER );
        return;
    }

    // parameters
    kome::objects::Parameters params;

    kome::plugin::PluginCallTool::setXYData( params, src );
    kome::plugin::PluginCallTool::setUpdatedXYData( params, dst );
    kome::plugin::PluginCallTool::setSettingValues( params, m_settings );
    kome::plugin::PluginCallTool::setSpectrum( params, *spec );
    
    kome::plugin::PluginCallTool::setControlGroup( params, *m_stdGroup );
    kome::plugin::PluginCallTool::setGroup( params, *m_trmtGroup );
    
    // normalization methods
    m_fun->invoke( &params );   
}

//on update (chromatogram)
void Normalization::onUpdate(
    kome::core::XYData& src,
    kome::core::XYData& dst,
    kome::objects::Chromatogram& chrom
){
    m_trmtGroup = chrom.getOrgChromatogram()->getGroup(); // @date 2014.03.06 <Mod> M.Izumi
    getUpdatedData( src, dst, NULL );
}

// on update (spectrum)
void Normalization::onUpdate(
        kome::core::XYData& src,
        kome::core::XYData& dst, 
        kome::objects::Spectrum& spec
){
    m_trmtGroup = spec.getOrgSpectrum()->getGroup();    // @date 2014.03.06 <Mod> M.Izumi
    getUpdatedData( src, dst, &spec );
}

// on update (sample)
void Normalization::onUpdate(
        kome::core::XYData& src,
        kome::core::XYData& dst, 
        kome::objects::Sample& sample
) {
    m_trmtGroup = sample.getRootDataGroupNode();
    getUpdatedData( src, dst, NULL );
}