kome::operation::Normalization Class Reference

normalization class More...

#include <Normalization.h>

Inheritance diagram for kome::operation::Normalization:

Collaboration diagram for kome::operation::Normalization:

Public Member Functions
	Normalization ()
	constructor
virtual	~Normalization ()
	destructor
void	setNormalizInfo (kome::plugin::PluginCall *func, kome::objects::SettingParameterValues *settings, kome::objects::DataGroupNode *stdGroup)
	sets filter information More...
Public Member Functions inherited from kome::objects::XYDataOperation
	XYDataOperation ()
	constructor
virtual	~XYDataOperation ()
	destructor
void	setName (const char *name)
	sets name More...
const char *	getName ()
	gets name More...
void	setIndex (int index)
	set index More...
int	getIndex ()
	get index More...
void	update (kome::core::XYData &src, kome::core::XYData &dst, Chromatogram &chrom)
	updates xy data More...
void	update (kome::core::XYData &src, kome::core::XYData &dst, Spectrum &spec)
	updates xy data More...
void	update (kome::core::XYData &src, kome::core::XYData &dst, Sample &sample)
	updates xy data More...

Protected Member Functions
void	init ()
	initializes
virtual void	getUpdatedData (kome::core::XYData &src, kome::core::XYData &dst, kome::objects::Spectrum *spec)
	gets updated data points More...
virtual void	onUpdate (kome::core::XYData &src, kome::core::XYData &dst, kome::objects::Chromatogram &chrom)
	This method is called by update method. (override method) More...
virtual void	onUpdate (kome::core::XYData &src, kome::core::XYData &dst, kome::objects::Spectrum &spec)
	This method is called by update method. (override method) More...
virtual void	onUpdate (kome::core::XYData &src, kome::core::XYData &dst, kome::objects::Sample &sample)
	This method is called by update method. (override method) More...

Protected Attributes
kome::plugin::PluginCall *	m_fun
kome::objects::SettingParameterValues	m_settings
kome::objects::DataGroupNode *	m_stdGroup
kome::objects::DataGroupNode *	m_trmtGroup
Protected Attributes inherited from kome::objects::XYDataOperation
std::string	m_name
int	m_index

Detailed Description

normalization class

Definition at line 28 of file Normalization.h.

Member Function Documentation

void kome::operation::Normalization::getUpdatedData ( kome::core::XYData &  src, kome::core::XYData &  dst, kome::objects::Spectrum *  spec  )

protectedvirtual

gets updated data points

Parameters

[in]	src	source xy data
[out]	dst	the object to store updated xy data
[in]	spec	spectrum

Definition at line 99 of file Normalization.cpp.

 {
    // check the member
    if( m_fun == NULL ){
        LOG_WARN_CODE( FMT( "The filter function is not assigned." ), ERR_NULL_POINTER );
        return;
    }

    // parameters
    kome::objects::Parameters params;

    kome::plugin::PluginCallTool::setXYData( params, src );
    kome::plugin::PluginCallTool::setUpdatedXYData( params, dst );
    kome::plugin::PluginCallTool::setSettingValues( params, m_settings );
    kome::plugin::PluginCallTool::setSpectrum( params, *spec );
    
    kome::plugin::PluginCallTool::setControlGroup( params, *m_stdGroup );
    kome::plugin::PluginCallTool::setGroup( params, *m_trmtGroup );
    
    // normalization methods
    m_fun->invoke( &params );   
}

void kome::operation::Normalization::onUpdate ( kome::core::XYData &  src, kome::core::XYData &  dst, kome::objects::Chromatogram &  chrom  )

protectedvirtual

This method is called by update method. (override method)

Parameters

[in]	src	source xy data
[out]	dst	the object to store updated xy data
[in]	chrom	chromatogram

Implements kome::objects::XYDataOperation.

Definition at line 126 of file Normalization.cpp.

 {
    m_trmtGroup = chrom.getOrgChromatogram()->getGroup(); // @date 2014.03.06 <Mod> M.Izumi
    getUpdatedData( src, dst, NULL );
}

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void kome::operation::Normalization::onUpdate ( kome::core::XYData &  src, kome::core::XYData &  dst, kome::objects::Spectrum &  spec  )

protectedvirtual

This method is called by update method. (override method)

Parameters

[in]	src	source xy data
[out]	dst	the object to store updated xy data
[in]	spec	spectrum

Implements kome::objects::XYDataOperation.

Definition at line 136 of file Normalization.cpp.

 {
    m_trmtGroup = spec.getOrgSpectrum()->getGroup();    // @date 2014.03.06 <Mod> M.Izumi
    getUpdatedData( src, dst, &spec );
}

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void kome::operation::Normalization::onUpdate ( kome::core::XYData &  src, kome::core::XYData &  dst, kome::objects::Sample &  sample  )

protectedvirtual

This method is called by update method. (override method)

Parameters

[in]	src	source xy data
[out]	dst	the object to store updated xy data
[in]	sample	sample object

Implements kome::objects::XYDataOperation.

Definition at line 146 of file Normalization.cpp.

  {
    m_trmtGroup = sample.getRootDataGroupNode();
    getUpdatedData( src, dst, NULL );
}

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void kome::operation::Normalization::setNormalizInfo	(	kome::plugin::PluginCall *	func,
		kome::objects::SettingParameterValues *	settings,
		kome::objects::DataGroupNode *	stdGroup
	)

sets filter information

Parameters

[in]	func	filter function
[in]	settings	setting parameter values
[in]	stdGroup	standard group

Definition at line 49 of file Normalization.cpp.

 {
    // initialize
    init();
    if( func == NULL ){
        return;
    }
    
    if( stdGroup != NULL ){
        m_stdGroup = stdGroup;
    }

    // set information
    m_fun = func;
    if( settings != NULL ){
        m_settings = *settings;
    }

    // item
    kome::plugin::PluginFunctionItem item;
    item.setInfo( func );

    // set name
    std::string name = FMT( "Normalization [%s", item.getLongName() );
    std::string paramStr;
    for( unsigned int i=0; i < m_settings.getNumberOfParameters(); i++ ){
        // add parameter name
        if( !paramStr.empty() ){
            paramStr.append( ", " );
        }

        std::string name = m_settings.getParameterName( i );
        std::string value = m_settings.getParameterValue( i );

        paramStr.append( FMT( "%s=%s", name.c_str(), value.c_str() ) );
    }

    if( paramStr.empty() ){
        name.append( "]" );
    }else{
        name.append( FMT( "(%s)]", paramStr.c_str() ) );
    }

    setName( name.c_str() );
}

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Member Data Documentation

kome::plugin::PluginCall* kome::operation::Normalization::m_fun

protected

filter function

Definition at line 44 of file Normalization.h.

kome::objects::SettingParameterValues kome::operation::Normalization::m_settings

protected

parameters

Definition at line 47 of file Normalization.h.

kome::objects::DataGroupNode* kome::operation::Normalization::m_stdGroup

protected

standard group

Definition at line 50 of file Normalization.h.

kome::objects::DataGroupNode* kome::operation::Normalization::m_trmtGroup

protected

treatment group

Definition at line 53 of file Normalization.h.

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The documentation for this class was generated from the following files:

• DataOperation/Normalization.h
• DataOperation/Normalization.cpp